{ "_id": "6a1edcefb401979e7340fefb", "Package": "famSKATRC", "Type": "Package", "Title": "Family Sequence Kernel Association Test for Rare and Common\nVariants", "Version": "1.1.0", "Author": "Khalid B. Kunji [aut, cre], Mohamad Saad [aut]", "Authors@R": "c(person(given = \"Khalid B.\", family = \"Kunji\", role = c(\"aut\",\n\"cre\"), email = \"kkunji@hbku.edu.qa\"), person(given = \"Mohamad\",\nfamily = \"Saad\", role = c(\"aut\"), email = \"msaad@hbku.edu.qa\"))", "Maintainer": "Khalid B. Kunji ", "Description": "FamSKAT-RC is a family-based association kernel test for\nboth rare and common variants. This test is general and several\nspecial cases are known as other methods: famSKAT, which only\nfocuses on rare variants in family-based data, SKAT, which\nfocuses on rare variants in population-based data (unrelated\nindividuals), and SKAT-RC, which focuses on both rare and\ncommon variants in population-based data. When one applies\nfamSKAT-RC and sets the value of phi to 1, famSKAT-RC becomes\nfamSKAT. When one applies famSKAT-RC and set the value of phi\nto 1 and the kinship matrix to the identity matrix, famSKAT-RC\nbecomes SKAT. When one applies famSKAT-RC and set the kinship\nmatrix (fullkins) to the identity matrix (and phi is not equal\nto 1), famSKAT-RC becomes SKAT-RC. We also include a small\nsample synthetic pedigree to demonstrate the method with. For\nmore details see Saad M and Wijsman EM (2014)\n.", "License": "GPL (>= 3)", "URL": "https://www.r-project.org,\nhttps://www.ncbi.nlm.nih.gov/pubmed/25132070", "Encoding": "UTF-8", "LazyData": "true", "KeepSource": "TRUE", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 08:25:39 UTC", "User": "root" }, "Repository": "https://kkunji.r-universe.dev", "Date/Publication": "2017-11-09 14:01:06 UTC", "RemoteUrl": "https://github.com/cran/famSKATRC", "RemoteRef": "HEAD", "RemoteSha": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "MD5sum": "be02a72c58c5ae64ccaacd66830a02be", "_user": "kkunji", "_type": "src", "_file": "famSKATRC_1.1.0.tar.gz", "_fileid": "e87de69ea41d1f1e014107a128faaf85ec57618d9aa107d7460f284bbb7ea226", "_filesize": 116432, "_sha256": "e87de69ea41d1f1e014107a128faaf85ec57618d9aa107d7460f284bbb7ea226", "_created": "2026-05-20T08:25:39.000Z", "_published": "2026-06-02T13:38:55.973Z", "_distro": "noble", "_jobs": [ { "job": 79083826447, "time": 108, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7104960982" }, { "job": 79083826581, "time": 104, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7104959643" }, { "job": 79083826303, "time": 130, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7104968350" }, { "job": 79083827343, "time": 97, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7104956854" }, { "job": 79083825799, "time": 174, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7104920550" }, { "job": 79083825679, "time": 109, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7359284512" }, { "job": 79083827019, "time": 103, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7104959204" }, { "job": 79083826830, "time": 82, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7104951537" }, { "job": 79083826500, "time": 81, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7104952586" } ], "_buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/famSKATRC", "_commit": { "id": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "author": "Khalid B. Kunji ", "committer": "cran-robot ", "message": "version 1.1.0\n", "time": 1510236066 }, "_maintainer": { "name": "Khalid B. Kunji", "email": "kkunji@hbku.edu.qa", "login": "kkunji", "description": "", "uuid": 39335954 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.1", "role": "Depends" }, { "package": "CompQuadForm", "role": "Imports" }, { "package": "kinship2", "role": "Imports" }, { "package": "coxme", "role": "Imports" }, { "package": "bdsmatrix", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "kkunji", "count": 2, "uuid": 39335954 } ], "_userbio": { "uuid": 39335954, "type": "user", "name": "kkunji" }, "_downloads": { "count": 561, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/famSKATRC" }, "_searchresults": 4, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/famSKATRC.html", "manual.pdf" ], "_realowner": "kkunji", "_cranurl": false, "_releases": [ { "version": "1.0.3", "date": "2017-10-12" }, { "version": "1.1.0", "date": "2017-11-09" } ], "_exports": [ "famSKAT_RC", "process_data" ], "_datasets": [ { "name": "sample.ped.geno", "title": "Sample Pedigree Genotype Data", "object": "sample.ped.geno", "class": [ "data.frame" ], "fields": [ "FID", "IID", "FA", "MO", "SEX", "Phenotype", "rs1", "rs2", "rs3", "rs4", "rs5", "rs6", "rs7", "rs8", "rs9", "rs10", "rs11", "rs12", "rs13", "rs14", "rs15", "rs16", "rs17", "rs18", "rs19", "rs20", "rs21", "rs22", "rs23", "rs24", "rs25", "rs26", "rs27", "rs28", "rs29", "rs30" ], "rows": 20, "table": true, "tojson": true } ], "_help": [ { "page": "famSKAT_RC", "title": "famSKAT_RC", "topics": [ "famSKAT_RC" ] }, { "page": "famSKATRC-package", "title": "Family Sequence Kernel Association Test for Rare and Common Variants", "topics": [ "famSKATRC" ] }, { "page": "process_data", "title": "Process Data", "topics": [ "process_data" ] }, { "page": "sample.ped.geno", "title": "Sample Pedigree Genotype Data", "topics": [ "sample.ped.geno" ] } ], "_rundeps": [ "bdsmatrix", "CompQuadForm", "coxme", "evaluate", "highr", "kinship2", "knitr", "lattice", "Matrix", "nlme", "quadprog", "survival", "xfun", "yaml" ], "_score": 1, "_indexed": true, "_nocasepkg": "famskatrc", "_universes": [ "kkunji" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-20T08:27:22.000Z", "distro": "noble", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "8bcf98d271c07adced240e122a0aed3b0759d3561fe9d6fae02c1cee65d49aee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-20T08:27:18.000Z", "distro": "noble", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "3a83c63264ab085f7795c555ebaaae8894c1237e10af6a83c512b142c695c057", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-05-20T08:27:44.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "3dad683d96a4888729edfe9dec9cf76e93341bc8918f0f44089c26df1d971f7f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-05-20T08:27:19.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "d644bbc803a4cca984d79352a94375b61b67833da0afe4dd50f02df33f56f1a8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-05-20T08:27:08.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "7b4e609e4ad13f9bc5e0401cb75373233c9547642847d5c3766ae83b586ce8ac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-05-20T08:26:51.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "f8b905fda5f68a490b264f501127360a44fcbba86e07e4b0a430b15f6fa2c32b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-05-20T08:26:54.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "0dcf5642be99c2601476551d2cf7604e21d573124be1603da4bcdc424fdff129", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-06-02T13:38:03.000Z", "commit": "27278805c5bf3e0df34deabd161b78f87ec5d35a", "fileid": "4717de8fd428eccaefa7dcb12539dc22f38fab80f7bd4055ffc8d69c40758f4f", "status": "success", "buildurl": "https://github.com/r-universe/kkunji/actions/runs/26150356190" } ] }