Package: famSKATRC 1.1.0
famSKATRC: Family Sequence Kernel Association Test for Rare and Common Variants
FamSKAT-RC is a family-based association kernel test for both rare and common variants. This test is general and several special cases are known as other methods: famSKAT, which only focuses on rare variants in family-based data, SKAT, which focuses on rare variants in population-based data (unrelated individuals), and SKAT-RC, which focuses on both rare and common variants in population-based data. When one applies famSKAT-RC and sets the value of phi to 1, famSKAT-RC becomes famSKAT. When one applies famSKAT-RC and set the value of phi to 1 and the kinship matrix to the identity matrix, famSKAT-RC becomes SKAT. When one applies famSKAT-RC and set the kinship matrix (fullkins) to the identity matrix (and phi is not equal to 1), famSKAT-RC becomes SKAT-RC. We also include a small sample synthetic pedigree to demonstrate the method with. For more details see Saad M and Wijsman EM (2014) <doi:10.1002/gepi.21844>.
Authors:
famSKATRC_1.1.0.tar.gz
famSKATRC_1.1.0.zip(r-4.5)famSKATRC_1.1.0.zip(r-4.4)famSKATRC_1.1.0.zip(r-4.3)
famSKATRC_1.1.0.tgz(r-4.4-any)famSKATRC_1.1.0.tgz(r-4.3-any)
famSKATRC_1.1.0.tar.gz(r-4.5-noble)famSKATRC_1.1.0.tar.gz(r-4.4-noble)
famSKATRC_1.1.0.tgz(r-4.4-emscripten)famSKATRC_1.1.0.tgz(r-4.3-emscripten)
famSKATRC.pdf |famSKATRC.html✨
famSKATRC/json (API)
# Install 'famSKATRC' in R: |
install.packages('famSKATRC', repos = c('https://kkunji.r-universe.dev', 'https://cloud.r-project.org')) |
- sample.ped.geno - Sample Pedigree Genotype Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:27278805c5. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-win | OK | Oct 31 2024 |
R-4.5-linux | OK | Oct 31 2024 |
R-4.4-win | OK | Oct 31 2024 |
R-4.4-mac | OK | Oct 31 2024 |
R-4.3-win | OK | Oct 31 2024 |
R-4.3-mac | OK | Oct 31 2024 |
Exports:famSKAT_RCprocess_data
Dependencies:bdsmatrixCompQuadFormcoxmeevaluatehighrkinship2knitrlatticeMatrixnlmequadprogsurvivalxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
famSKAT_RC | famSKAT_RC |
Family Sequence Kernel Association Test for Rare and Common Variants | famSKATRC |
Process Data | process_data |
Sample Pedigree Genotype Data | sample.ped.geno |